2WI5 Chaperone date May 08, 2009
title Orally Active 2-Amino Thienopyrimidine Inhibitors Of The Hsp90 Chaperone
authors P.A.Brough, X.Barril, J.Borgognoni, P.Chene, N.G.M.Davies, B.Davi M.J.Drysdale, B.Dymock, S.A.Eccles, C.Garcia-Echeverria, C.From A.Hayes, R.E.Hubbard, A.M.Jordan, M.Rugaard-Jensen, A.Massey, A. A.Padfield, R.Parsons, T.Radimerski, F.I.Raynaud, A.Robertson, S.D.Roughley, J.Schoepfer, H.Simmonite, A.Surgenor, M.Valenti, S P.Webb, M.Wood, P.Workman, L.M.Wright
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Atp-Binding Domain, Residues 1-236
Synonym: Hsp 86, Renal Carcinoma Antigen Ny-Ren-38
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Skin
Tissue: Melanoma
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet19
Other_details: Cloned From Image\:4026275
symmetry Space Group: I 2 2 2
R_factor 0.21856 R_Free 0.30230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.804 88.709 99.467 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ZZ5 BindingDB enzyme
Primary referenceCombining Hit Identification Strategies: Fragment-Based and in Silico Approaches to Orally Active 2-Aminothieno[2,3-d]pyrimidine Inhibitors of the Hsp90 Molecular Chaperone., Brough PA, Barril X, Borgognoni J, Chene P, Davies NG, Davis B, Drysdale MJ, Dymock B, Eccles SA, Garcia-Echeverria C, Fromont C, Hayes A, Hubbard RE, Jordan AM, Jensen MR, Massey A, Merrett A, Padfield A, Parsons R, Radimerski T, Raynaud FI, Robertson A, Roughley SD, Schoepfer J, Simmonite H, Sharp SY, Surgenor A, Valenti M, Walls S, Webb P, Wood M, Workman P, Wright L, J Med Chem. 2009 Jul 17. PMID:19610616
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2wi5.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 2WI5
  • CSU: Contacts of Structural Units for 2WI5
  • Likely Quarternary Molecular Structure file(s) for 2WI5
  • Structure Factors (218 Kb)
  • Retrieve 2WI5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WI5 from S2C, [Save to disk]
  • Re-refined 2wi5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WI5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WI5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WI5, from MSDmotif at EBI
  • Fold representative 2wi5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wi5] [2wi5_A]
  • SWISS-PROT database: [P07900]
  • Domain organization of [HS90A_HUMAN] by SWISSPFAM
  • Domain found in 2WI5: [HATPase_c ] by SMART
  • Other resources with information on 2WI5
  • Community annotation for 2WI5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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