2WIZ Hydrolase Dna date May 18, 2009
title Crystal Structures Of Holliday Junction Resolvases From Archaeoglobus Fulgidus Bound To Dna Substrate
authors C.Carolis, C.Koehler, C.Sauter, J.Basquin, D.Suck, I.Toeroe
compound source
Molecule: Archaeal Hjc
Chain: A, B
Fragment: Residues 2-136
Engineered: Yes
Other_details: N-Terminus Contains Extra Residues As A Result Of Cloning Procedure;
Organism_scientific: Archaeoglobus Fulgidus Dsm 4304
Organism_taxid: 224325
Atcc: 49558
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plyss
Expression_system_plasmid: Petm12
Other_details: German Collection Of Microorganisms (Dsm)

Molecule: Half-Junction
Chain: C
Other_details: Synthesized

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Synthesized By Metabion Gmbh, Martinsried, Germany;

Molecule: Half-Junction
Chain: D
Other_details: Synthesized

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Synthesized By Metabion Gmbh, Martinsried, Germany
symmetry Space Group: P 62 2 2
R_factor 0.2043 R_Free 0.2832
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.650 122.650 125.510 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (2wiz.pdb1.gz) 241 Kb
  • CSU: Contacts of Structural Units for 2WIZ
  • Likely Quarternary Molecular Structure file(s) for 2WIZ
  • Structure Factors (120 Kb)
  • Retrieve 2WIZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WIZ from S2C, [Save to disk]
  • Re-refined 2wiz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WIZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WIZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WIZ, from MSDmotif at EBI
  • Fold representative 2wiz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wiz_C] [2wiz_A] [2wiz_D] [2wiz_B] [2wiz]
  • SWISS-PROT database: [O28314]
  • Domain organization of [O28314_ARCFU] by SWISSPFAM
  • Other resources with information on 2WIZ
  • Community annotation for 2WIZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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