2WKL Hydrolase date Jun 15, 2009
title Velaglucerase Alfa
authors B.Brumshtein, P.Salinas, B.Peterson, V.Chan, I.Silman, J.L.Sussman, P.J.Savickas, G.S.Robinson, A.H.Futerman
compound source
Molecule: Glucosylceramidase
Chain: A, B
Synonym: Beta-Glucocerebrosidase, Acid Beta-Glucosidase, D-Glucosyl-N-Acylsphingosine Glucohydrolase, Alglucerase, Imiglucerase;
Ec: 3.2.1.45
Other_details: Glycosylation On Asn19 Chain A, Asn146 Chain A And On Asn19 Chain B
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.17293 R_Free 0.23392
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.371 285.552 91.693 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand NAG, SO4 enzyme Hydrolase E.C.3.2.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

  • Primary referenceCharacterization of Gene-activated Human Acid-{beta}-Glucosidase: Crystal Structure, Glycan Composition and Internalization into Macrophages., Brumshtein B, Salinas P, Peterson B, Chan V, Silman I, Sussman JL, Savickas PJ, Robinson GS, Futerman AH, Glycobiology. 2009 Sep 9. PMID:19741058
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (2wkl.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (2wkl.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 2WKL
  • CSU: Contacts of Structural Units for 2WKL
  • Structure Factors (346 Kb)
  • Retrieve 2WKL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WKL from S2C, [Save to disk]
  • Re-refined 2wkl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WKL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WKL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WKL, from MSDmotif at EBI
  • Fold representative 2wkl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wkl_A] [2wkl] [2wkl_B]
  • SWISS-PROT database: [P04062]
  • Domain organization of [GLCM_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2WKL with the sequences similar proteins can be viewed for 2WKL's classification [GLCM_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [GLCM_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2WKL
  • Community annotation for 2WKL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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