2WL1 Signaling Protein date Jun 19, 2009
title Pyrin Pryspry Domain
authors C.Weinert, P.R.Mittl, M.G.Gruetter
compound source
Molecule: Pyrin
Chain: A
Fragment: Pryspry, Residues 586-776
Synonym: Marenostrin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgex6p
symmetry Space Group: P 65 2 2
R_factor 0.193 R_Free 0.219
length a length b length c angle alpha angle beta angle gamma
60.270 60.270 182.030 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.35 Å
ligand EDO, SCN enzyme
note 2WL1 is a representative structure
Primary referenceThe Crystal Structure of Human Pyrin B30.2 Domain: Implications for Mutations Associated with Familial Mediterranean Fever., Weinert C, Grutter C, Roschitzki-Voser H, Mittl PR, Grutter MG, J Mol Biol. 2009 Aug 31. PMID:19729025
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (2wl1.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2WL1
  • CSU: Contacts of Structural Units for 2WL1
  • Structure Factors (293 Kb)
  • Retrieve 2WL1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WL1 from S2C, [Save to disk]
  • Re-refined 2wl1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WL1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WL1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WL1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b2wl1, region L:1-107 [Jmol] [rasmolscript] [script source]
  • Fold representative 2wl1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wl1] [2wl1_A]
  • SWISS-PROT database: [O15553]
  • Domain organization of [MEFV_HUMAN] by SWISSPFAM
  • Domains found in 2WL1: [PRY] [SPRY ] by SMART
  • Other resources with information on 2WL1
  • Community annotation for 2WL1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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