2WM8 Hydrolase date Jun 30, 2009
title Crystal Structure Of Human Magnesium-Dependent Phosphatase 1 Haloacid Dehalogenase Superfamily (Mgc5987)
authors W.W.Yue, N.Shafqat, A.C.W.Pike, A.Chaikuad, J.E.Bray, E.W.Pilka, N Brown, E.Hapka, P.Filippakopoulos, F.Von Delft, C.Arrowsmith, J. A.Edwards, C.Bountra, U.Oppermann
compound source
Molecule: Magnesium-Dependent Phosphatase 1
Chain: A
Fragment: Residues 1-165
Synonym: Mdp-1
Ec: 3.8.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 43 21 2
R_factor 0.163 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.340 62.340 111.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand EDO enzyme Hydrolase E.C.3.8.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • acid phosphatase activity
  • phosphoprotein phosphatase a...
  • protein tyrosine phosphatase...
  • phosphatase activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2wm8.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 2WM8
  • CSU: Contacts of Structural Units for 2WM8
  • Likely Quarternary Molecular Structure file(s) for 2WM8
  • Structure Factors (300 Kb)
  • Retrieve 2WM8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WM8 from S2C, [Save to disk]
  • Re-refined 2wm8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WM8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WM8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WM8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wm8] [2wm8_A]
  • SWISS-PROT database: [Q86V88]
  • Domain organization of [MGDP1_HUMAN] by SWISSPFAM
  • Other resources with information on 2WM8
  • Community annotation for 2WM8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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