2WNO	Cell Adhesion	date	Jul 13, 2009
title	X-Ray Structure Of Cub_c Domain From Tsg-6
authors	D.C.Briggs, A.J.Day
compound		source
Molecule: Tumor Necrosis Factor-Inducible Gene 6 Protein Chain: A Fragment: Cub_c, Residues 129-277 Synonym: Tumor Necrosis Factor-Inducible Protein Tsg-6, Tnf Stimulated Gene 6 Protein, Tsg-6, Tumor Necrosis Factor Alp Protein 6, Tnf Alpha-Induced Protein 6, Hyaluronate-Binding Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta Gami-B Expression_system_plasmid: Prk172
symmetry	Space Group: P 43 21 2	R_factor 0.191 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.929 56.929 112.572 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CA, CO	enzyme
note	2WNO is a representative structure
Primary reference	Metal Ion-dependent Heavy Chain Transfer Activity of TSG-6 Mediates Assembly of the Cumulus-Oocyte Matrix., Briggs DC, Birchenough HL, Ali T, Rugg MS, Waltho JP, Ievoli E, Jowitt TA, Enghild JJ, Richter RP, Salustri A, Milner CM, Day AJ, J Biol Chem. 2015 Nov 27;290(48):28708-23. doi: 10.1074/jbc.M115.669838. Epub, 2015 Oct 14. PMID:26468290

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (2wno.pdb1.gz) 42 Kb LPC: Ligand-Protein Contacts for 2WNO CSU: Contacts of Structural Units for 2WNO Structure Factors (126 Kb) Retrieve 2WNO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WNO from S2C, [Save to disk] Re-refined 2wno structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WNO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WNO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WNO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wno] [2wno_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2WNO: [CUB ] by SMART

Other resources with information on 2WNO

Community annotation for 2WNO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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