2WOK	Peptide Binding Protein Peptide	date	Jul 26, 2009
title	Clavulanic Acid Biosynthesis Oligopeptide Binding Protein 2 With Bradykinin
authors	A.K.Mackenzie, K.Valegard, A.Iqbal, M.E.C.Caines, N.J.Kershaw, S. C.J.Schofield, I.Andersson
compound		source
Molecule: Clavulanic Acid Biosynthesis Oligopeptide Binding 2; Chain: A Synonym: Orf15 Engineered: Yes		Organism_scientific: Streptomyces Clavuligerus Organism_taxid: 1901 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Kininogen-1 Chain: B Synonym: Bradykinin,Alpha-2-Thiol Proteinase Inhibitor,Fitz Factor,High Molecular Weight Kininogen,Hmwk,Williams-Fitzge Flaujeac Factor; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.185 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.511 83.327 62.380 90.00 95.54 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal Structures of an Oligopeptide-Binding Protein from the Biosynthetic Pathway of the beta-Lactamase Inhibitor Clavulanic Acid., Mackenzie AK, Valegard K, Iqbal A, Caines ME, Kershaw NJ, Jensen SE, Schofield CJ, Andersson I, J Mol Biol. 2009 Nov 24. PMID:19941870

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (2wok.pdb1.gz) 93 Kb LPC: Ligand-Protein Contacts for 2WOK CSU: Contacts of Structural Units for 2WOK Structure Factors (439 Kb) Retrieve 2WOK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WOK from S2C, [Save to disk] Re-refined 2wok structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WOK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WOK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WOK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wok] [2wok_B] [2wok_A] SWISS-PROT database: [P01042] [Q8KRB4] Domain organization of [KNG1_HUMAN] [Q8KRB4_STRCL] by SWISSPFAM

Other resources with information on 2WOK

Community annotation for 2WOK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---