2WOT Transferase date Jul 28, 2009
title Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)Oxy)-N-(3,4,5-Trimethoxyphenyl)Pyridin-2-Amine
authors R.A.Norman, J.E.Debreczeni, F.W.Goldberg, R.A.Ward, R.Finlay, S.J N.J.Roberts, A.P.Dishington, H.J.Gingell, K.F.Wickson, A.L.Robe
compound source
Molecule: Tgf-Beta Receptor Type-1
Chain: A
Fragment: Catalytic Domain, Residues 200-503
Synonym: Alk5, Transforming Growth Factor-Beta Receptor Typ Tgf-Beta Receptor Type I, Tgf-Beta Type I Receptor, Tbetar Tgfr-1, Serinethreonine-Protein Kinase Receptor R4, Skr4, Receptor-Like Kinase 5, Alk-5;
Ec: 2.7.11.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.17883 R_Free 0.22134
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.933 78.218 89.074 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand EDO, ZZG BindingDB enzyme Transferase E.C.2.7.11.30 BRENDA
Primary referenceRapid Generation of a High Quality Lead for Transforming Growth Factor-beta (TGF-beta) Type I Receptor (ALK5) (dagger)., Goldberg FW, Ward RA, Powell SJ, Debreczeni JE, Norman RA, Roberts NJ, Dishington AP, Gingell HJ, Wickson KF, Roberts AL, J Med Chem. 2009 Sep 8. PMID:19736928
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2wot.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 2WOT
  • CSU: Contacts of Structural Units for 2WOT
  • Structure Factors (339 Kb)
  • Retrieve 2WOT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WOT from S2C, [Save to disk]
  • Re-refined 2wot structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WOT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WOT, from MSDmotif at EBI
  • Fold representative 2wot from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wot] [2wot_A]
  • SWISS-PROT database: [P36897]
  • Domain organization of [TGFR1_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2WOT with the sequences similar proteins can be viewed for 2WOT's classification [TGFR1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [TGFR1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2WOT
  • Community annotation for 2WOT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science