2WT7 Transcription date Sep 11, 2009
title Crystal Structure Of The Bzip Heterodimeric Complex Mafb:Cfo Dna
authors V.Pogenberg, S.Holton, M.Wilmanns
compound source
Molecule: Proto-Oncogene Protein C-Fos
Chain: A
Fragment: Residues 138-200
Synonym: Cfos, Cellular Oncogene Fos
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Codon Plus Ril
Expression_system_vector: Pet-M11

Molecule: Transcription Factor Mafb
Chain: B
Fragment: Residues 214-303
Synonym: Mafb, Maf-B, V-Maf Musculoaponeurotic Fibrosarcoma Homolog B, Transcription Factor Maf-1, Segmentation Protein Kreisler;
Engineered: Yes
Mutation: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Codon Plus Ril
Expression_system_vector: Pet-M11

Molecule: Modified T-Mare Motif
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Modified T-Mare Motif
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 62
R_factor 0.228 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.676 146.676 51.117 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand PO4 enzyme
note 2WT7 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceDesign of a bZip Transcription Factor with Homo/Heterodimer-Induced DNA-Binding Preference., Pogenberg V, Consani Textor L, Vanhille L, Holton SJ, Sieweke MH, Wilmanns M, Structure. 2014 Feb 11. pii: S0969-2126(14)00009-4. doi:, 10.1016/j.str.2013.12.017. PMID:24530283
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (2wt7.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 2WT7
  • CSU: Contacts of Structural Units for 2WT7
  • Structure Factors (527 Kb)
  • Retrieve 2WT7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WT7 from S2C, [Save to disk]
  • Re-refined 2wt7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WT7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WT7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WT7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wt7_A] [2wt7] [2wt7_C] [2wt7_B] [2wt7_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2WT7: [BRLZ ] by SMART
  • Other resources with information on 2WT7
  • Community annotation for 2WT7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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