2WTD Transferase date Sep 15, 2009
title Crystal Structure Of Chk2 In Complex With An Inhibitor
authors S.Hilton, S.Naud, J.J.Caldwell, K.Boxall, S.Burns, V.E.Anderson, L C.E.Allen, L.H.Pearl, A.W.Oliver, G.W.Aherne, M.D.Garrett, I.Col
compound source
Molecule: Serinethreonine-Protein Kinase Chk2
Chain: A
Fragment: Kinase Domain, Residues 210-531
Synonym: Checkpoint Kinase 2, Cds1
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)Plyss
Expression_system_plasmid: Pthree-E
symmetry Space Group: P 32 2 1
R_factor 0.191 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.890 90.890 92.830 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand EDO, NO3, ZZK BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification and characterisation of 2-aminopyridine inhibitors of checkpoint kinase 2., Hilton S, Naud S, Caldwell JJ, Boxall K, Burns S, Anderson VE, Antoni L, Allen CE, Pearl LH, Oliver AW, Wynne Aherne G, Garrett MD, Collins I, Bioorg Med Chem. 2009 Dec 6. PMID:20022510
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2wtd.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2WTD
  • CSU: Contacts of Structural Units for 2WTD
  • Structure Factors (610 Kb)
  • Retrieve 2WTD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WTD from S2C, [Save to disk]
  • Re-refined 2wtd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WTD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WTD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WTD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wtd_A] [2wtd]
  • SWISS-PROT database: [O96017]
  • Domain organization of [CHK2_HUMAN] by SWISSPFAM
  • Domain found in 2WTD: [S_TKc ] by SMART
  • Other resources with information on 2WTD
  • Community annotation for 2WTD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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