2WVR Replication date Oct 19, 2009
title Human Cdt1:Geminin Complex
authors V.De Marco, A.Perrakis
compound source
Molecule: Geminin
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2
Expression_system_plasmid: Pet2746

Molecule: Dna Replication Factor Cdt1
Chain: C
Synonym: Cdt1, Double Parked Homolog, Dup
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2
Expression_system_plasmid: Pet2746
symmetry Space Group: P 43 21 2
R_factor 0.2403 R_Free 0.3007
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.804 92.804 164.842 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


Primary referenceQuaternary structure of the human Cdt1-Geminin complex regulates DNA replication licensing., De Marco V, Gillespie PJ, Li A, Karantzelis N, Christodoulou E, Klompmaker R, van Gerwen S, Fish A, Petoukhov MV, Iliou MS, Lygerou Z, Medema RH, Blow JJ, Svergun DI, Taraviras S, Perrakis A, Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19807-12. Epub 2009 Nov 11. PMID:19906994
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (2wvr.pdb1.gz) 219 Kb
  • CSU: Contacts of Structural Units for 2WVR
  • Structure Factors (148 Kb)
  • Retrieve 2WVR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WVR from S2C, [Save to disk]
  • Re-refined 2wvr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WVR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WVR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WVR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wvr_B] [2wvr] [2wvr_A] [2wvr_C]
  • SWISS-PROT database: [Q9H211] [O75496]
  • Domain organization of [CDT1_HUMAN] [GEMI_HUMAN] by SWISSPFAM
  • Domain found in 2WVR: [CDT1 ] by SMART
  • Other resources with information on 2WVR
  • Community annotation for 2WVR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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