2WW9 Cryo-EM structure of the active yeast Ssh1 complex bound to the yeast 80S ribosome date
authors Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 8.60
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


H

  • cytosolic large ribosomal su...
  • I


    J

  • cytosolic large ribosomal su...
  • K

  • cytosolic large ribosomal su...
  • L


    M


    N

  • cytosolic large ribosomal su...
  • O

  • cytosolic large ribosomal su...
  • Primary referenceStructure of monomeric yeast and Mammalian sec61 complexes interacting with the translating ribosome., Becker T, Bhushan S, Jarasch A, Armache JP, Funes S, Jossinet F, Gumbart J, Mielke T, Berninghausen O, Schulten K, Westhof E, Gilmore R, Mandon EC, Beckmann R, Science. 2009 Dec 4;326(5958):1369-73. Epub 2009 Oct 29. PMID:19933108
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (2ww9.pdb1.gz) 247 Kb
  • CSU: Contacts of Structural Units for 2WW9
  • Retrieve 2WW9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WW9 from S2C, [Save to disk]
  • View 2WW9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WW9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WW9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ww9_D] [2ww9_A] [2ww9_K] [2ww9_L] [2ww9_N] [2ww9_O] [2ww9_C] [2ww9_E] [2ww9_H] [2ww9_I] [2ww9_B] [2ww9_J] [2ww9_G] [2ww9_M] [2ww9] [2ww9_F]
  • SWISS-PROT database: [P05740] [P05735] [P04456] [P05743] [P0C2H8] [P39741] [P04650] [P49626] [P35179] [P52871] [P38353]
  • Belongs to the general secretory pathway (sec) family according to TCDB.
  • Domain organization of [RL17A_YEAST] [RL19_YEAST] [RL25_YEAST] [RL26A_YEAST] [RL31A_YEAST] [RL35_YEAST] [RL39_YEAST] [RL4B_YEAST] [SC61G_YEAST] [SC6B2_YEAST] [SSH1_YEAST] by SWISSPFAM
  • Domains found in 2WW9: [KOW] [Ribosomal_L19e] [Ribosomal_L31e ] by SMART
  • Other resources with information on 2WW9
  • Community annotation for 2WW9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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