2WWR Oxidoreductase date Oct 26, 2009
title Crystal Structure Of Human Glyoxylate Reductase Hydroxypyruv Reductase
authors M.P.S.Booth, R.Conners, G.Rumsby, R.L.Brady
compound source
Molecule: Glyoxylate Reductasehydroxypyruvate Reductase
Chain: A, B, C, D
Ec: 1.1.1.79
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_plasmid: Ptrchisb
symmetry Space Group: P 21 21 21
R_factor 0.21739 R_Free 0.27857
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.356 116.080 198.230 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.82 Å
ligand MG enzyme Oxidoreductase E.C.1.1.1.79 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis of substrate specificity in human glyoxylate reductase/hydroxypyruvate reductase., Booth MP, Conners R, Rumsby G, Brady RL, J Mol Biol. 2006 Jun 30;360(1):178-89. Epub 2006 May 22. PMID:16756993
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (2wwr.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (2wwr.pdb2.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 2WWR
  • CSU: Contacts of Structural Units for 2WWR
  • Structure Factors (273 Kb)
  • Retrieve 2WWR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WWR from S2C, [Save to disk]
  • Re-refined 2wwr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WWR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WWR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WWR, from MSDmotif at EBI
  • Fold representative 2wwr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wwr_A] [2wwr_C] [2wwr_B] [2wwr] [2wwr_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2WWR with the sequences similar proteins can be viewed for 2WWR's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2WWR
  • Community annotation for 2WWR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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