2WYA	Transferase	date	Nov 13, 2009
title	Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-Methylg Coenzyme A Synthase 2 (Hmgcs2)
authors	W.W.Yue, N.Shafqat, P.Savitsky, A.K.Roos, C.Cooper, J.W.Murray, F. Delft, C.Arrowsmith, M.Wikstrom, A.Edwards, C.Bountra, U.Opperma
compound		source
Molecule: Hydroxymethylglutaryl-Coa Synthase, Mitochondrial Chain: A, B, C, D Fragment: Residues 51-508 Synonym: Hmg-Coa Synthase, 3-Hydroxy-3-Methylglutaryl Coenz Synthase; Ec: 2.3.3.10 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organelle: Mitochondria Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: R3-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnh-Trxt
symmetry	Space Group: P 1	R_factor 0.161 R_Free 0.184
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.410 83.514 101.442 100.00 108.08 96.30
method	X-Ray Diffraction	resolution	1.70 Å
ligand	GOL, HMG	enzyme	Transferase E.C.2.3.3.10 BRENDA
note	2WYA supersedes 2V4W
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal Structures of Human HMG-CoA Synthase Isoforms Provide Insights into Inherited Ketogenesis Disorders and Inhibitor Design., Shafqat N, Turnbull A, Zschocke J, Oppermann U, Yue WW, J Mol Biol. 2010 Mar 25. PMID:20346956

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (612 Kb) [Save to disk] Biological Unit Coordinates (2wya.pdb1.gz) 305 Kb Biological Unit Coordinates (2wya.pdb2.gz) 303 Kb LPC: Ligand-Protein Contacts for 2WYA CSU: Contacts of Structural Units for 2WYA Structure Factors (10444 Kb) Retrieve 2WYA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WYA from S2C, [Save to disk] Re-refined 2wya structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WYA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WYA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WYA, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wya_B] [2wya_A] [2wya_C] [2wya_D] [2wya] SWISS-PROT database: [P54868] Domain organization of [HMCS2_HUMAN] by SWISSPFAM

Other resources with information on 2WYA

Community annotation for 2WYA at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---