2WYQ Dna Binding Protein date Nov 19, 2009
title The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain Of (Human Homologue A Of Rad23)
authors Y.W.Chen
compound source
Molecule: Uv Excision Repair Protein Rad23 Homolog A
Chain: A
Fragment: Ubiquitin-Like Domain, Residues 1-82
Synonym: Hhr23a
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 (De3)
symmetry Space Group: P 65 2 2
R_factor 0.124 R_Free 0.160
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.434 78.434 63.472 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.65 Å
ligand SO4 enzyme
Primary referenceThe crystal structure of the ubiquitin-like (UbL) domain of human homologue A of Rad23 (hHR23A) protein., Chen YW, Tajima T, Agrawal S, Protein Eng Des Sel. 2010 Nov 3. PMID:21047872
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2wyq.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (2wyq.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 2WYQ
  • CSU: Contacts of Structural Units for 2WYQ
  • Structure Factors (94 Kb)
  • Retrieve 2WYQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WYQ from S2C, [Save to disk]
  • Re-refined 2wyq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2WYQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2WYQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WYQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wyq_A] [2wyq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2WYQ: [UBQ ] by SMART
    • Other resources with information on 2WYQ
  • Community annotation for 2WYQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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