2WZB Transferase date Nov 27, 2009
title The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase In Complex With Adp, 3pg And Magnesium Trifluoride
authors M.W.Bowler, M.J.Cliff, J.P.M.Marston, N.J.Baxter, A.M.H.Hownslow A.V.Varga, J.Szabo, M.Vas, G.M.Blackburn, J.P.Waltho
compound source
Molecule: Phosphoglycerate Kinase 1
Chain: A
Fragment: Residues 2-417
Synonym: Primer Recognition Protein 2, Prp 2, Cell Migration-Inducing Gene 10 Protein;
Ec: 2.7.2.3
Engineered: Yes
Other_details: Complexed With Adp, 3pg And Magnesium Fluori
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 21 21 21
R_factor 0.16094 R_Free 0.18630
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.430 92.180 109.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.47 Å
ligand 3PG, ADP, CL, MG, MGF enzyme Transferase E.C.2.7.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTransition State Analogue Structures of Human Phosphoglycerate Kinase Establish the Importance of Charge Balance in Catalysis., Cliff MJ, Bowler MW, Varga A, Marston JP, Szabo J, Hounslow AM, Baxter NJ, Blackburn GM, Vas M, Waltho JP, J Am Chem Soc. 2010 Apr 19. PMID:20397725
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (2wzb.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 2WZB
  • CSU: Contacts of Structural Units for 2WZB
  • Structure Factors (3286 Kb)
  • Retrieve 2WZB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WZB from S2C, [Save to disk]
  • Re-refined 2wzb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WZB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WZB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WZB, from MSDmotif at EBI
  • Fold representative 2wzb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wzb] [2wzb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2WZB
  • Community annotation for 2WZB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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