2WZQ Hydrolase date Dec 02, 2009
title Insertion Mutant E173gp174 Of The Ns3 Protease-Helicase From Dengue Virus
authors D.Luo, N.Wei, D.Doan, P.Paradkar, Y.Chong, A.Davidson, M.Kotaka, J. S.Vasudevan
compound source
Molecule: Ns3 Protease-Helicase
Chain: A
Fragment: Residues 1475-1647,1648-2092
Engineered: Yes
Organism_scientific: Dengue Virus
Organism_taxid: 12637
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ns3 Protease-Helicase
Chain: C
Fragment: Residues 1393-1410
Engineered: Yes

Organism_scientific: Dengue Virus
Organism_taxid: 12637
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.22 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.420 87.720 75.779 90.00 92.90 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CL, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFlexibility between the protease and helicase domains of the dengue virus NS3 protein conferred by the linker region and its functional implications., Luo D, Wei N, Doan DN, Paradkar PN, Chong Y, Davidson AD, Kotaka M, Lescar J, Vasudevan SG, J Biol Chem. 2010 Apr 7. PMID:20375022
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (2wzq.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 2WZQ
  • CSU: Contacts of Structural Units for 2WZQ
  • Structure Factors (233 Kb)
  • Retrieve 2WZQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WZQ from S2C, [Save to disk]
  • Re-refined 2wzq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WZQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WZQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WZQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wzq_A] [2wzq] [2wzq_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2WZQ: [DEXDc ] by SMART
  • Other resources with information on 2WZQ
  • Community annotation for 2WZQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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