2X0N Oxidoreductase date Dec 16, 2009
title Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydroge Trypanosoma Brucei Determined From Laue Data
authors F.M.D.Vellieux, J.Hajdu, W.G.J.Hol
compound source
Molecule: Glyceraldehyde-3-Phosphate Dehydrogenase, Glycoso
Chain: A, B, O, P, Q, R
Synonym: Gadph
Ec: 1.2.1.12
Organism_scientific: Trypanosoma Brucei Brucei
Organism_taxid: 5702
symmetry Space Group: P 21 21 2
R_factor 0.150 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.520 256.270 114.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand NAD, SO4 enzyme Oxidoreductase E.C.1.2.1.12 BRENDA
note 2X0N supersedes 1GGA
Gene
Ontology
ChainFunctionProcessComponent
A, Q, O, R, P, B


Primary referenceStructure of glycosomal glyceraldehyde-3-phosphate dehydrogenase from Trypanosoma brucei determined from Laue data., Vellieux FM, Hajdu J, Verlinde CL, Groendijk H, Read RJ, Greenhough TJ, Campbell JW, Kalk KH, Littlechild JA, Watson HC, et al., Proc Natl Acad Sci U S A. 1993 Mar 15;90(6):2355-9. PMID:8460146
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (693 Kb) [Save to disk]
  • Biological Unit Coordinates (2x0n.pdb1.gz) 455 Kb
  • Biological Unit Coordinates (2x0n.pdb2.gz) 459 Kb
  • LPC: Ligand-Protein Contacts for 2X0N
  • CSU: Contacts of Structural Units for 2X0N
  • Structure Factors (297 Kb)
  • Retrieve 2X0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X0N from S2C, [Save to disk]
  • Re-refined 2x0n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X0N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2X0N, from MSDmotif at EBI
  • Fold representative 2x0n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x0n_O] [2x0n_P] [2x0n] [2x0n_R] [2x0n_B] [2x0n_A] [2x0n_Q]
  • SWISS-PROT database: [P22512]
  • Domain organization of [G3PG_TRYBB] by SWISSPFAM
  • Domain found in 2X0N: [Gp_dh_N ] by SMART
  • Other resources with information on 2X0N
  • Community annotation for 2X0N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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