2X0V Cell Cycle date Dec 17, 2009
title Structure Of The P53 Core Domain Mutant Y220c Bound To 4-( Trifluoromethyl)Benzene-1,2-Diamine
authors N.Basse, J.L.Kaar, A.C.Joerger, A.R.Fersht
compound source
Molecule: Cellular Tumor Antigen P53
Chain: A, B
Fragment: Dna-Binding Domain, Residues 94-312
Synonym: Tumor Suppressor P53, Phosphoprotein P53, Antigen Ny-Co-13, P53;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.1622 R_Free 0.1890
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.226 71.088 105.389 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand X0V, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceToward the rational design of p53-stabilizing drugs: probing the surface of the oncogenic Y220C mutant., Basse N, Kaar JL, Settanni G, Joerger AC, Rutherford TJ, Fersht AR, Chem Biol. 2010 Jan 29;17(1):46-56. PMID:20142040
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (2x0v.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (2x0v.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 2X0V
  • CSU: Contacts of Structural Units for 2X0V
  • Structure Factors (2190 Kb)
  • Retrieve 2X0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X0V from S2C, [Save to disk]
  • Re-refined 2x0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X0V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2X0V, from MSDmotif at EBI
  • Fold representative 2x0v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x0v_B] [2x0v] [2x0v_A]
  • SWISS-PROT database: [P04637]
  • Belongs to the pore-forming pnc-27 peptide of 32 aas from the p53 tumor suppressor protein (pnc-27) family according to TCDB.
  • Domain organization of [P53_HUMAN] by SWISSPFAM
  • Other resources with information on 2X0V
  • Community annotation for 2X0V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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