2X13 Transferase date Dec 21, 2009
title The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase In Complex With Adp And 3phosphogly
authors M.W.Bowler, M.J.Cliff, J.P.M.Marston, N.J.Baxter, A.M.H.Hownslow A.V.Varga, J.Szabo, M.Vas, G.M.Blackburn, J.P.Waltho
compound source
Molecule: Phosphoglycerate Kinase 1
Chain: A
Synonym: Primer Recognition Protein 2, Prp 2, Cell Migration-Inducing Gene 10 Protein;
Ec: 2.7.2.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 21 21 21
R_factor 0.18530 R_Free 0.21810
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.940 91.440 108.510 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.74 Å
ligand 3PG, ADP, MG enzyme Transferase E.C.2.7.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (2x13.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 2X13
  • CSU: Contacts of Structural Units for 2X13
  • Structure Factors (1917 Kb)
  • Retrieve 2X13 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X13 from S2C, [Save to disk]
  • Re-refined 2x13 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X13 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X13
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2X13, from MSDmotif at EBI
  • Fold representative 2x13 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x13_A] [2x13]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2X13 with the sequences similar proteins can be viewed for 2X13's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2X13
  • Community annotation for 2X13 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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