2X15 Transferase date Dec 21, 2009
title The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase In Complex With Adp And 1,3- Bisphosphoglycerate
authors M.W.Bowler, M.J.Cliff, J.P.M.Marston, N.J.Baxter, A.M.H.Hounslow A.V.Varga, J.Szabo, M.Vas, G.M.Blackburn, J.P.Waltho
compound source
Molecule: Phosphoglycerate Kinase 1
Chain: A
Synonym: Primer Recognition Protein 2, Cell Migration-Induc 10 Protein, Prp 2;
Ec: 2.7.2.3
Engineered: Yes
Other_details: Complexed With Adp And 1,3-Bpg
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 21 21 21
R_factor 0.19249 R_Free 0.23795
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.730 91.750 108.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 3PG, ADP, ATP, MG, X15 enzyme Transferase E.C.2.7.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2x15.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2X15
  • CSU: Contacts of Structural Units for 2X15
  • Structure Factors (1097 Kb)
  • Retrieve 2X15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X15 from S2C, [Save to disk]
  • Re-refined 2x15 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X15
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2X15, from MSDmotif at EBI
  • Fold representative 2x15 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x15_A] [2x15]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2X15
  • Community annotation for 2X15 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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