2X15 Transferase date Dec 21, 2009
title The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase In Complex With Adp And 1,3- Bisphosphoglycerate
authors M.W.Bowler, M.J.Cliff, J.P.M.Marston, N.J.Baxter, A.M.H.Hounslow A.V.Varga, J.Szabo, M.Vas, G.M.Blackburn, J.P.Waltho
compound source
Molecule: Phosphoglycerate Kinase 1
Chain: A
Synonym: Primer Recognition Protein 2, Cell Migration-Induc 10 Protein, Prp 2;
Ec: 2.7.2.3
Engineered: Yes
Other_details: Complexed With Adp And 1,3-Bpg
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 21 21 21
R_factor 0.19249 R_Free 0.23795
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.730 91.750 108.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 3PG, ADP, ATP, MG, X15 enzyme Transferase E.C.2.7.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2x15.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2X15
  • CSU: Contacts of Structural Units for 2X15
  • Structure Factors (1097 Kb)
  • Retrieve 2X15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X15 from S2C, [Save to disk]
  • Re-refined 2x15 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X15
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2X15, from MSDmotif at EBI
  • Fold representative 2x15 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x15_A] [2x15]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2X15 with the sequences similar proteins can be viewed for 2X15's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2X15
  • Community annotation for 2X15 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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