2X36 Hydrolase date Jan 21, 2010
title Structure Of The Proteolytic Domain Of The Human Mitochondrial Lon Protease
authors J.Garcia, G.Ondrovicova, E.Blagova, V.M.Levdikov, J.A.Bauer, E.Kutejova, A.J.Wilkinson, K.S.Wilson
compound source
Molecule: Lon Protease Homolog, Mitochondrial
Chain: A, B, C, D, E, F
Fragment: Proteolytic Domain, Residues 753-959
Synonym: Lon Protease-Like Protein, Lonp, Lonhs, Serine Protease 15, Mitochondrial Atp-Dependent Protease Lon;
Ec: 3.4.21.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta II
Expression_system_vector: Proex
symmetry Space Group: P 1 21 1
R_factor 0.19355 R_Free 0.23230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.800 83.750 105.490 90.00 90.05 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.4.21 BRENDA
Primary referenceStructure of the catalytic domain of the human mitochondrial Lon protease: proposed relation of oligomer formation and activity., Garcia-Nafria J, Ondrovicova G, Blagova E, Levdikov VM, Bauer JA, Suzuki CK, Kutejova E, Wilkinson AJ, Wilson KS, Protein Sci. 2010 May;19(5):987-99. PMID:20222013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (2x36.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (2x36.pdb2.gz) 90 Kb
  • CSU: Contacts of Structural Units for 2X36
  • Structure Factors (572 Kb)
  • Retrieve 2X36 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X36 from S2C, [Save to disk]
  • Re-refined 2x36 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X36 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X36
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2X36, from MSDmotif at EBI
  • Fold representative 2x36 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x36] [2x36_A] [2x36_F] [2x36_B] [2x36_C] [2x36_D] [2x36_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2X36
  • Community annotation for 2X36 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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