2X4D Hydrolase date Jan 29, 2010
title Crystal Structure Of Human Phospholysine Phosphohistidine In Pyrophosphate Phosphatase Lhpp
authors M.Vollmar, C.Gileadi, K.Guo, P.Savitsky, J.R.C.Muniz, W.Yue, C.All F.Von Delft, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edwards, K.L.Kavanagh, U.Oppermann
compound source
Molecule: Phospholysine Phosphohistidine Inorganic Pyrophos Phosphatase;
Chain: A, B
Synonym: Hlhpp
Ec: 3.6.1.1, 3.1.3.-
Engineered: Yes
Mutation: Yes
Other_details: As A Result Of Expression System Sequence St Ser0
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.227 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.210 39.410 112.920 90.00 91.79 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand EPE, GOL, MG, POP enzyme Hydrolase E.C.3.6.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (2x4d.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 2X4D
  • CSU: Contacts of Structural Units for 2X4D
  • Structure Factors (267 Kb)
  • Retrieve 2X4D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X4D from S2C, [Save to disk]
  • Re-refined 2x4d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X4D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X4D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X4D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x4d_A] [2x4d_B] [2x4d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2X4D
  • Community annotation for 2X4D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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