2X4Z Transferase date Feb 03, 2010
title Crystal Structure Of The Human P21-Activated Kinase 4 In Com Pf-03758309
authors D.R.Knighton, Y.Deng, B.Murray, C.Guo, J.Piraino, J.Westwick, C.Zh J.Lamerdin, E.Dagostino, C.M.Loi, M.Zager, E.Kraynov, J.Christe R.Martinez, S.Kephart, J.Marakovits, S.Karlicek, S.Bergqvist, T.
compound source
Molecule: Serinethreonine-Protein Kinase Pak 4
Chain: A
Fragment: Kinase Domain, Residues 296-591
Synonym: P21-Activated Kinase 4, Pak-4
Engineered: Yes
Mutation: Yes
Other_details: S474 Is Phosphorylated
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.262
length a length b length c angle alpha angle beta angle gamma
55.654 65.923 84.653 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 7KC, GOL, SEP, X4Z enzyme Transferase E.C. BRENDA
Primary referenceSmall-molecule p21-activated kinase inhibitor PF-3758309 is a potent inhibitor of oncogenic signaling and tumor growth., Murray BW, Guo C, Piraino J, Westwick JK, Zhang C, Lamerdin J, Dagostino E, Knighton D, Loi CM, Zager M, Kraynov E, Popoff I, Christensen JG, Martinez R, Kephart SE, Marakovits J, Karlicek S, Bergqvist S, Smeal T, Proc Natl Acad Sci U S A. 2010 May 3. PMID:20439741
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2x4z.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 2X4Z
  • CSU: Contacts of Structural Units for 2X4Z
  • Structure Factors (160 Kb)
  • Retrieve 2X4Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X4Z from S2C, [Save to disk]
  • Re-refined 2x4z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X4Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X4Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2X4Z, from MSDmotif at EBI
  • Fold representative 2x4z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x4z_A] [2x4z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2X4Z: [S_TKc ] by SMART
  • Other resources with information on 2X4Z
  • Community annotation for 2X4Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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