2X5J Oxidoreductase date Feb 09, 2010
title Crystal Structure Of The Apoform Of The D-Erythrose-4-Phosph Dehydrogenase From E. Coli
authors S.Moniot, C.Didierjean, S.Boschi-Muller, G.Branlant, C.Corbier
compound source
Molecule: D-Erythrose-4-Phosphate Dehydrogenase
Chain: O, P, Q, R
Synonym: E4pdh
Ec: 1.2.1.72
Engineered: Yes
Other_details: Complex With Phosphate Anion
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Variant: Hb101
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: K-12
Expression_system_variant: Tg1
Expression_system_vector_type: Plasmid
Expression_system_vector: Pbluescript(Sk)+
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.300 110.700 138.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand PO4 enzyme Oxidoreductase E.C.1.2.1.72 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
Q, O, R, P


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (2x5j.pdb1.gz) 213 Kb
  • LPC: Ligand-Protein Contacts for 2X5J
  • CSU: Contacts of Structural Units for 2X5J
  • Structure Factors (454 Kb)
  • Retrieve 2X5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X5J from S2C, [Save to disk]
  • Re-refined 2x5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X5J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X5J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x5j_Q] [2x5j] [2x5j_R] [2x5j_P] [2x5j_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2X5J: [Gp_dh_N ] by SMART
  • Other resources with information on 2X5J
  • Community annotation for 2X5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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