2X6G Immune System date Feb 17, 2010
title X-Ray Structure Of Macrophage Inflammatory Protein-1 Alpha (D27a)
authors Q.Guo, M.Ren, W.Tang
compound source
Molecule: C-C Motif Chemokine 3
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Synonym: Macrophage Inflammatory Protein 1-Alpha, Small-Ind Cytokine A3, Mip-1-Alpha, Tonsillar Lymphocyte Ld78 Alpha G0g1 Switch Regulatory Protein 19-1, Sis-Beta, Pat 464.1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.2105 R_Free 0.2857
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.211 113.527 173.596 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G


Primary referencePolymerization of MIP-1 chemokine (CCL3 and CCL4) and clearance of MIP-1 by insulin-degrading enzyme., Ren M, Guo Q, Guo L, Lenz M, Qian F, Koenen RR, Xu H, Schilling AB, Weber C, Ye RD, Dinner AR, Tang WJ, EMBO J. 2010 Oct 19. PMID:20959807
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (2x6g.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (2x6g.pdb2.gz) 25 Kb
  • Biological Unit Coordinates (2x6g.pdb3.gz) 24 Kb
  • Biological Unit Coordinates (2x6g.pdb4.gz) 24 Kb
  • Biological Unit Coordinates (2x6g.pdb5.gz) 25 Kb
  • Biological Unit Coordinates (2x6g.pdb6.gz) 25 Kb
  • Biological Unit Coordinates (2x6g.pdb7.gz) 24 Kb
  • Biological Unit Coordinates (2x6g.pdb8.gz) 24 Kb
  • Biological Unit Coordinates (2x6g.pdb9.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2X6G
  • Structure Factors (614 Kb)
  • Retrieve 2X6G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X6G from S2C, [Save to disk]
  • Re-refined 2x6g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X6G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X6G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2X6G, from MSDmotif at EBI
  • Fold representative 2x6g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x6g_M] [2x6g_E] [2x6g_F] [2x6g_I] [2x6g_R] [2x6g_P] [2x6g_J] [2x6g_G] [2x6g_N] [2x6g_A] [2x6g_H] [2x6g] [2x6g_O] [2x6g_K] [2x6g_Q] [2x6g_D] [2x6g_L] [2x6g_C] [2x6g_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2X6G: [SCY ] by SMART
  • Other resources with information on 2X6G
  • Community annotation for 2X6G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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