2X6L Immune System date Feb 17, 2010
title X-Ray Structure Of Macrophage Inflammatory Protein-1 Beta
authors Q.Guo, M.Ren, W.Tang
compound source
Molecule: C-C Motif Chemokine 4
Chain: A, B, C, D, E
Synonym: Small-Inducible Cytokine A4, Macrophage Inflammato Protein 1-Beta, Mip-1-Beta(1-69), T-Cell Activation Protei 744, Protein H400, Sis-Gamma, Lymphocyte Activation Gene 1 Protein, Hc21, G-26 T-Lymphocyte-Secreted Protein, Mip-1-Beta(3-69), Mip-1-Beta, Act-2, Lag-1, Macrophage Inflammatory Protein-1 Beta
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.1864 R_Free 0.2603
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.811 87.892 186.610 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand GOL enzyme
note 2X6L supersedes 3KKH
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referencePolymerization of MIP-1 chemokine (CCL3 and CCL4) and clearance of MIP-1 by insulin-degrading enzyme., Ren M, Guo Q, Guo L, Lenz M, Qian F, Koenen RR, Xu H, Schilling AB, Weber C, Ye RD, Dinner AR, Tang WJ, EMBO J. 2010 Oct 19. PMID:20959807
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2x6l.pdb1.gz) 113 Kb
  • Biological Unit Coordinates (2x6l.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (2x6l.pdb3.gz) 24 Kb
  • Biological Unit Coordinates (2x6l.pdb4.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 2X6L
  • CSU: Contacts of Structural Units for 2X6L
  • Structure Factors (388 Kb)
  • Retrieve 2X6L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X6L from S2C, [Save to disk]
  • Re-refined 2x6l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X6L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X6L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2X6L, from MSDmotif at EBI
  • Fold representative 2x6l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x6l_C] [2x6l_D] [2x6l_E] [2x6l] [2x6l_B] [2x6l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2X6L: [SCY ] by SMART
  • Alignments of the sequence of 2X6L with the sequences similar proteins can be viewed for 2X6L's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2X6L
  • Community annotation for 2X6L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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