2X7M Hydrolase date Mar 01, 2010
title Crystal Structure Of Archaemetzincin (Amza) From Methanopyru Kandleri At 1.5 A Resolution
authors S.M.Waltersperger, C.Widmer, U.Baumann
compound source
Molecule: Archaemetzincin
Chain: A
Ec: 3.-.-.-
Engineered: Yes
 Organism_scientific: Methanopyrus Kandleri
Organism_taxid: 190192
Strain: Av19
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.510 55.080 58.270 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ZN enzyme Hydrolase E.C.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of archaemetzincin amza from Methanopyrus kandleri at 1.5 A resolution., Waltersperger S, Widmer C, Wang M, Baumann U, Proteins. 2010 May 28. PMID:20597090
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (2x7m.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 2X7M
  • CSU: Contacts of Structural Units for 2X7M
  • Structure Factors (171 Kb)
  • Retrieve 2X7M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X7M from S2C, [Save to disk]
  • Re-refined 2x7m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2X7M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2X7M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X7M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x7m] [2x7m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2X7M
  • Community annotation for 2X7M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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