2X7O Transferase date Mar 03, 2010
title Crystal Structure Of Tgfbri Complexed With An Indolinone Inhibitor
authors G.J.Roth, A.Heckel, T.Brandl, M.Grauert, S.Hoerer, J.T.Kley, G.Sch P.Baum, D.Mennerich, A.Schnapp, J.E.Park
compound source
Molecule: Tgf-Beta Receptor Type I
Chain: A, B, C, D, E
Fragment: Cytoplasmic Domain, Residues 162-503
Synonym: Tgfr-1, Transforming Growth Factor-Beta Receptor T Tgf-Beta Receptor Type I, Tbetar-I, Tgf-Beta Type I Recept Serinethreonine-Protein Kinase Receptor, R4skr4, Activin Receptor-Like Kinase 5, Alk-5;
Ec: 2.7.11.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: High Five
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pdest10
symmetry Space Group: C 2 2 21
R_factor 0.2670 R_Free 0.2732
crystal
cell
length a length b length c angle alpha angle beta angle gamma
179.929 246.561 131.617 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.70 Å
ligand ZOP BindingDB enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceDesign, Synthesis, and Evaluation of Indolinones as Inhibitors of the Transforming Growth Factor beta Receptor I (TGFbetaRI)., Roth GJ, Heckel A, Brandl T, Grauert M, Hoerer S, Kley JT, Schnapp G, Baum P, Mennerich D, Schnapp A, Park JE, J Med Chem. 2010 Oct 4. PMID:20919678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (2x7o.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (2x7o.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (2x7o.pdb3.gz) 58 Kb
  • Biological Unit Coordinates (2x7o.pdb4.gz) 58 Kb
  • Biological Unit Coordinates (2x7o.pdb5.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 2X7O
  • CSU: Contacts of Structural Units for 2X7O
  • Structure Factors (366 Kb)
  • Retrieve 2X7O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X7O from S2C, [Save to disk]
  • Re-refined 2x7o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X7O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X7O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2X7O, from MSDmotif at EBI
  • Fold representative 2x7o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x7o_D] [2x7o] [2x7o_E] [2x7o_C] [2x7o_B] [2x7o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2X7O: [GS ] by SMART
  • Other resources with information on 2X7O
  • Community annotation for 2X7O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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