2XAF	Transcription	date	Mar 31, 2010
title	Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
authors	C.Binda, S.Valente, M.Romanenghi, S.Pilotto, R.Cirilli, A.Karytinos, G.Ciossani, O.A.Botrugno, F.Forneris, M.Tardugno, D.E.Edmondson, S.Minucci, A.Mattevi, A.Mai
compound		source
Molecule: Lysine-Specific Histone Demethylase 1 Chain: A Synonym: Lysine-Specific Histone Demethylase Lsd1, Flavin-Containing Amine Oxidase Domain-Containing Protein 2, Braf35-Hdac Complex Protein Bhc110; Ec: 1.-.-.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rest Corepressor 1 Chain: B Synonym: Corepressor Corest, Protein Corest Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 2 2 2	R_factor 0.20197 R_Free 0.22853
crystal cell	length a length b length c angle alpha angle beta angle gamma 119.560 179.480 235.420 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.25 Å
ligand	FAD, TCF	enzyme	Oxidoreductase E.C.1 BRENDA
Gene Ontology	Chain Function Process Component A negative regulation of DNA b... B
Primary reference	Biochemical, Structural, and Biological Evaluation of Tranylcypromine Derivatives as Inhibitors of Histone Demethylases LSD1 and LSD2., Binda C, Valente S, Romanenghi M, Pilotto S, Cirilli R, Karytinos A, Ciossani G, Botrugno OA, Forneris F, Tardugno M, Edmondson DE, Minucci S, Mattevi A, Mai A, J Am Chem Soc. 2010 Apr 23. PMID:20415477

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk] Biological Unit Coordinates (2xaf.pdb1.gz) 130 Kb LPC: Ligand-Protein Contacts for 2XAF CSU: Contacts of Structural Units for 2XAF Structure Factors (554 Kb) Retrieve 2XAF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2XAF from S2C, [Save to disk] Re-refined 2xaf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2XAF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2XAF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2XAF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2xaf_A] [2xaf] [2xaf_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 2XAF: [ELM2] [SANT ] by SMART

Other resources with information on 2XAF

Community annotation for 2XAF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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