2XB4 Transferase date Apr 05, 2010
title Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas
authors A.Mukhopadhyay, A.V.Kladova, O.Y.Gavel, J.J.Calvete, V.L.Shnyrov J.J.G.Moura, S.A.Bursakov, M.J.Romao, J.Trincao
compound source
Molecule: Adenylate Kinase
Chain: A
Ec: 2.7.4.3
 Organism_scientific: Desulfovibrio Gigas
Organism_taxid: 879
symmetry Space Group: I 2 2 2
R_factor 0.17793 R_Free 0.21152
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.390 119.440 149.590 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand SRT, ZN enzyme Transferase E.C.2.7.4.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • adenylate kinase activity


    • Primary referenceCrystal structure of the zinc-, cobalt-, and iron-containing adenylate kinase from Desulfovibrio gigas: a novel metal-containing adenylate kinase from Gram-negative bacteria., Mukhopadhyay A, Kladova AV, Bursakov SA, Gavel OY, Calvete JJ, Shnyrov VL, Moura I, Moura JJ, Romao MJ, Trincao J, J Biol Inorg Chem. 2010 Sep 7. PMID:20821240
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (2xb4.pdb1.gz) 310 Kb
  • LPC: Ligand-Protein Contacts for 2XB4
  • CSU: Contacts of Structural Units for 2XB4
  • Structure Factors (455 Kb)
  • Retrieve 2XB4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XB4 from S2C, [Save to disk]
  • Re-refined 2xb4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XB4 in 3D
  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 2XB4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XB4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xb4] [2xb4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2XB4
  • Community annotation for 2XB4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Adenylate Kinase (the movie)
  • Images from IMB Jena Image Library of Biological Macromolecules.

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