2XB7 Transferase date Apr 08, 2010
title Structure Of Human Anaplastic Lymphoma Kinase In Complex Wit Tae684
authors R.T.Bossi, M.B.Saccardo, E.Ardini, M.Menichincheri, L.Rusconi, P. P.Orsini, G.Fogliatto, J.A.Bertrand
compound source
Molecule: Alk Tyrosine Kinase Receptor
Chain: A
Fragment: Kinase Domain, Residues 1094-1407
Synonym: Anaplastic Lymphoma Kinase, Cd246
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector: Pvl1393
Expression_system_plasmid: Pvl-Gst-Alk-Kd
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.781 57.307 105.157 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GUI BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of anaplastic lymphoma kinase in complex with ATP competitive inhibitors., Bossi RT, Saccardo MB, Ardini E, Menichincheri M, Rusconi L, Magnaghi P, Orsini P, Avanzi N, Borgia AL, Nesi M, Bandiera T, Fogliatto G, Bertrand JA, Biochemistry. 2010 Aug 17;49(32):6813-25. PMID:20695522
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2xb7.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2XB7
  • CSU: Contacts of Structural Units for 2XB7
  • Structure Factors (191 Kb)
  • Retrieve 2XB7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XB7 from S2C, [Save to disk]
  • Re-refined 2xb7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XB7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XB7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XB7, from MSDmotif at EBI
  • Fold representative 2xb7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xb7] [2xb7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XB7: [TyrKc ] by SMART
  • Other resources with information on 2XB7
  • Community annotation for 2XB7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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