2XDL Chaperone date May 04, 2010
title Structure Of Hsp90 With Small Molecule Inhibitor Bound
authors C.W.Murray, M.G.Carr, O.Callaghan, G.Chessari, M.Congreve, S.Cowa J.E.Coyle, R.Downham, E.Figueroa, M.Frederickson, B.Graham, R.Mc M.A.Obrien, S.Patel, T.R.Phillips, G.Williams, A.J.Woodhead, A.J.A.Woolford
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: Residues 9-236
Synonym: Hsp90, Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Car Antigen Ny-Ren-38;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: I 2 2 2
R_factor 0.1908 R_Free 0.2516
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.227 90.154 100.626 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand 2DL enzyme
Primary referenceFragment-based drug discovery applied to hsp90. Discovery of two lead series with high ligand efficiency., Murray CW, Carr MG, Callaghan O, Chessari G, Congreve M, Cowan S, Coyle JE, Downham R, Figueroa E, Frederickson M, Graham B, McMenamin R, O'Brien MA, Patel S, Phillips TR, Williams G, Woodhead AJ, Woolford AJ, J Med Chem. 2010 Aug 26;53(16):5942-55. PMID:20718493
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2xdl.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 2XDL
  • CSU: Contacts of Structural Units for 2XDL
  • Structure Factors (359 Kb)
  • Retrieve 2XDL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XDL from S2C, [Save to disk]
  • Re-refined 2xdl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XDL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XDL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XDL, from MSDmotif at EBI
  • Fold representative 2xdl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xdl_A] [2xdl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XDL: [HATPase_c ] by SMART
  • Other resources with information on 2XDL
  • Community annotation for 2XDL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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