2XDX Chaperone date May 10, 2010
title Structre Of Hsp90 With Small Molecule Inhibitor Bound
authors C.W.Murray, M.G.Carr, O.Callaghan, G.Chessari, M.Congreve, S.Cowa J.E.Coyle, R.Downham, E.Figueroa, M.Frederickson, B.Graham, R.Mc M.A.Obrien, S.Patel, T.R.Phillips, G.Williams, A.J.Woodhead, A.J.A.Woolford
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: Residues 9-236
Synonym: Heat Shock 86 Kda, Hsp86, Renal Carcinoma Antigen Ny-Ren-38hsp90;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.2029 R_Free 0.3304
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.439 43.928 53.080 90.00 114.38 90.00
method X-Ray Diffractionresolution 2.42 Å
ligand WOE BindingDB enzyme
Primary referenceFragment-based drug discovery applied to hsp90. Discovery of two lead series with high ligand efficiency., Murray CW, Carr MG, Callaghan O, Chessari G, Congreve M, Cowan S, Coyle JE, Downham R, Figueroa E, Frederickson M, Graham B, McMenamin R, O'Brien MA, Patel S, Phillips TR, Williams G, Woodhead AJ, Woolford AJ, J Med Chem. 2010 Aug 26;53(16):5942-55. PMID:20718493
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2xdx.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2XDX
  • CSU: Contacts of Structural Units for 2XDX
  • Structure Factors (126 Kb)
  • Retrieve 2XDX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XDX from S2C, [Save to disk]
  • Re-refined 2xdx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XDX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XDX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XDX, from MSDmotif at EBI
  • Fold representative 2xdx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xdx] [2xdx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XDX: [HATPase_c ] by SMART
  • Other resources with information on 2XDX
  • Community annotation for 2XDX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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