2XE8 Transferase date May 11, 2010
title The Complete Reaction Cycle Of Human Phosphoglycerate Kinase Ternary Complex With 3pg And Amp-Pnp
authors M.J.Cliff, N.J.Baxter, G.M.Blackburn, A.Merli, M.Vas, J.P.Waltho, M.W.Bowler
compound source
Molecule: Phosphoglycerate Kinase 1
Chain: A
Synonym: Primer Recognition Protein 2, Prp 2, Cell Migratio Gene 10 Protein;
Ec: 2.7.2.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22a
symmetry Space Group: P 21 21 2
R_factor 0.198 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.320 71.170 91.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand 3PG, ACP enzyme Transferase E.C.2.7.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA Spring-loaded Release Mechanism Regulates Domain Movement and Catalysis in Phosphoglycerate Kinase., Zerrad L, Merli A, Schroder GF, Varga A, Graczer E, Pernot P, Round A, Vas M, Bowler MW, J Biol Chem. 2011 Apr 22;286(16):14040-8. Epub 2011 Feb 24. PMID:21349853
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (2xe8.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 2XE8
  • CSU: Contacts of Structural Units for 2XE8
  • Structure Factors (1720 Kb)
  • Retrieve 2XE8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XE8 from S2C, [Save to disk]
  • Re-refined 2xe8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XE8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XE8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XE8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xe8] [2xe8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XE8
  • Community annotation for 2XE8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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