2XGU Viral Protein date Jun 07, 2010
title Structure Of The N-Terminal Domain Of Capsid Protein From Rabbit Endogenous Lentivirus (Relik)
authors D.C.Goldstone, I.A.Taylor, L.E.Robertson, L.F.Haire, J.P.Stoye
compound source
Molecule: Relik Capsid N-Terminal Domain
Chain: A, B
Engineered: Yes
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet22b
Other_details: Synthesised Reconstructed Gene
symmetry Space Group: C 1 2 1
R_factor 0.1951 R_Free 0.2182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.000 38.680 84.717 90.00 114.87 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ACT enzyme
note 2XGU is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and functional analysis of prehistoric lentiviruses uncovers an ancient molecular interface., Goldstone DC, Yap MW, Robertson LE, Haire LF, Taylor WR, Katzourakis A, Stoye JP, Taylor IA, Cell Host Microbe. 2010 Sep 16;8(3):248-59. PMID:20833376
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (2xgu.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 2XGU
  • CSU: Contacts of Structural Units for 2XGU
  • Structure Factors (627 Kb)
  • Retrieve 2XGU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XGU from S2C, [Save to disk]
  • Re-refined 2xgu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XGU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XGU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XGU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xgu_A] [2xgu] [2xgu_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2XGU
  • Community annotation for 2XGU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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