2XHJ Sugar Binding Protein date Jun 16, 2010
title Circular Permutation Provides An Evolutionary Link Between T Families Of Calcium-Dependent Carbohydrate Binding Modules. Form Of Vcbm60.
authors C.Montanier, J.E.Flint, D.N.Bolam, H.Xie, Z.Liu, A.Rogowski, D.Wei S.Ratnaparkhe, D.Nurizzo, S.M.Roberts, J.P.Turkenburg, G.J.Davi H.J.Gilbert
compound source
Molecule: Calcium-Dependent Carbohydrate Binding Module
Chain: A
Engineered: Yes
Other_details: Selenomethionine Form Of The Protein Used Fo
 Organism_scientific: Cellvibrio Japonicus
Organism_taxid: 155077
Strain: Ncimb 10462
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834 (Novagen)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet22a
Other_details: Ncimb Culture Collection
symmetry Space Group: P 41 21 2
R_factor 0.126 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.805 45.805 102.439 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.73 Å
ligand CA, MSE enzyme
Primary referenceCircular permutation provides an evolutionary link between two families of calcium-dependent carbohydrate binding modules., Montanier C, Flint JE, Bolam DN, Xie H, Liu Z, Rogowski A, Weiner D, Ratnaparkhe S, Nurizzo D, Roberts SM, Turkenburg JP, Davies GJ, Gilbert HJ, J Biol Chem. 2010 Jul 21. PMID:20659893
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2xhj.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2XHJ
  • CSU: Contacts of Structural Units for 2XHJ
  • Structure Factors (148 Kb)
  • Retrieve 2XHJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XHJ from S2C, [Save to disk]
  • Re-refined 2xhj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XHJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XHJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XHJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xhj_A] [2xhj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2XHJ
  • Community annotation for 2XHJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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