2XHR Chaperone date Jun 21, 2010
title Structure Of Hsp90 With Small Molecule Inhibitor Bound
authors C.W.Murray, M.G.Carr, O.Callaghan, G.Chessari, M.Congreve, S.Cowa J.E.Coyle, R.Downham, E.Figueroa, M.Frederickson, B.Graham, R.Mc M.A.Obrien, S.Patel, T.R.Phillips, G.Williams, A.J.Woodhead, A.J.A.Woolford
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Domain (9-236)
Synonym: Hsp 86, Renal Carcinoma Antigen Ny-Ren-38
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90, Hsp90a, Hsp90aa1, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: I 2 2 2
R_factor 0.2506 R_Free 0.3036
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.652 89.559 99.181 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand C0P enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFragment-based drug discovery applied to hsp90. Discovery of two lead series with high ligand efficiency., Murray CW, Carr MG, Callaghan O, Chessari G, Congreve M, Cowan S, Coyle JE, Downham R, Figueroa E, Frederickson M, Graham B, McMenamin R, O'Brien MA, Patel S, Phillips TR, Williams G, Woodhead AJ, Woolford AJ, J Med Chem. 2010 Aug 26;53(16):5942-55. PMID:20718493
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2xhr.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2XHR
  • CSU: Contacts of Structural Units for 2XHR
  • Structure Factors (259 Kb)
  • Retrieve 2XHR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XHR from S2C, [Save to disk]
  • Re-refined 2xhr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XHR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XHR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XHR, from MSDmotif at EBI
  • Fold representative 2xhr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xhr] [2xhr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2XHR with the sequences similar proteins can be viewed for 2XHR's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2XHR
  • Community annotation for 2XHR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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