2XJC Crystal structure of the D52N variant of cytosolic 5'-nucleotidase II in complex with guanosine monophosphate and diadenosine tetraphosphate date
authors Wallden, K., Nordlund, P.
compound source
symmetry
R_factor
R_Free 0.21893
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 5GP, B4P, GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • 5'-nucleotidase activity


  • Primary referenceStructural Basis for the Allosteric Regulation and Substrate Recognition of Human Cytosolic 5'-Nucleotidase II., Wallden K, Nordlund P, J Mol Biol. 2011 May 13;408(4):684-96. Epub 2011 Mar 17. PMID:21396942
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (2xjc.pdb1.gz) 342 Kb
  • LPC: Ligand-Protein Contacts for 2XJC
  • CSU: Contacts of Structural Units for 2XJC
  • Structure Factors (725 Kb)
  • Retrieve 2XJC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XJC from S2C, [Save to disk]
  • Re-refined 2xjc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XJC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XJC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XJC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xjc_A] [2xjc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XJC
  • Community annotation for 2XJC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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