2XJG Chaperone date Jul 06, 2010
title Structure Of Hsp90 With Small Molecule Inhibitor Bound
authors C.W.Murray, M.G.Carr, O.Callaghan, G.Chessari, M.Congreve, S.Cowa J.E.Coyle, R.Downham, E.Figueroa, M.Frederickson, B.Graham, R.Mc M.A.Obrien, S.Patel, T.R.Phillips, B.Williams, A.J.Woodhead, A.J.A.Woolford
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: Residues 9-236
Synonym: Hsp90, Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Car Antigen Ny-Ren-38;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.2115 R_Free 0.2805
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.200 41.305 52.319 90.00 102.71 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand XJG enzyme
Primary referenceDiscovery of (2,4-Dihydroxy-5-isopropylphenyl)-[5-(4-methylpiperazin-1-ylmethyl)-1,3-di hydroisoindol-2-yl]methanone (AT13387), a Novel Inhibitor of the Molecular Chaperone Hsp90 by Fragment Based Drug Design., Woodhead AJ, Angove H, Carr MG, Chessari G, Congreve M, Coyle JE, Cosme J, Graham B, Day PJ, Downham R, Fazal L, Feltell R, Figueroa E, Frederickson M, Lewis J, McMenamin R, Murray CW, O'Brien MA, Parra L, Patel S, Phillips T, Rees DC, Rich S, Smith DM, Trewartha G, Vinkovic M, Williams B, Woolford AJ, J Med Chem. 2010 Jul 28. PMID:20662534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2xjg.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2XJG
  • CSU: Contacts of Structural Units for 2XJG
  • Structure Factors (154 Kb)
  • Retrieve 2XJG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XJG from S2C, [Save to disk]
  • Re-refined 2xjg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XJG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XJG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XJG, from MSDmotif at EBI
  • Fold representative 2xjg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xjg] [2xjg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XJG: [HATPase_c ] by SMART
  • Other resources with information on 2XJG
  • Community annotation for 2XJG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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