2XJY Oncoprotein date Jul 06, 2010
title Crystal Structure Of The Lmo2:Ldb1-Lid Complex, P21 Crystal
authors K.El Omari, D.Karia, C.Porcher, E.J.Mancini
compound source
Molecule: Rhombotin-2
Chain: A
Fragment: Residues 26-156
Synonym: Lim Domain Only Protein 2, Cysteine-Rich Protein T Cell Translocation Protein 2, Lmo-2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Lim Domain-Binding Protein 1
Chain: B
Fragment: Residues 334-368
Synonym: Nuclear Lim Interactor, Carboxyl-Terminal Lim Doma Protein 2, Lim Domain-Binding Factor Clim2, Ldb-1, Clim-2,
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
25.140 54.360 61.800 90.00 95.45 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructure of the leukemia oncogene LMO2: implications for the assembly of a hematopoietic transcription factor complex., El Omari K, Hoosdally SJ, Tuladhar K, Karia D, Vyas P, Patient R, Porcher C, Mancini EJ, Blood. 2011 Feb 17;117(7):2146-56. Epub 2010 Nov 12. PMID:21076045
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (2xjy.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2XJY
  • CSU: Contacts of Structural Units for 2XJY
  • Structure Factors (103 Kb)
  • Retrieve 2XJY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XJY from S2C, [Save to disk]
  • Re-refined 2xjy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XJY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XJY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XJY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xjy] [2xjy_A] [2xjy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XJY: [LIM ] by SMART
  • Other resources with information on 2XJY
  • Community annotation for 2XJY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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