2XK7 Transferase date Jul 07, 2010
title Structure Of Nek2 Bound To Aminopyrazine Compound 23
authors C.Mas-Droux, R.Bayliss
compound source
Molecule: Serinethreonine-Protein Kinase Nek2
Chain: A
Fragment: Catalytic Domain, Residues 1-271
Synonym: Nek2, Never In Mitosis A-Related Kinase 2, Nima-Re Protein Kinase 2, Nima-Like Protein Kinase 1, Hspk 21;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.175 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.200 56.770 74.140 90.00 127.61 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand 30E, CL BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAminopyrazine Inhibitors Binding to an Unusual Inactive Conformation of the Mitotic Kinase Nek2: SAR and Structural Characterization., Whelligan DK, Solanki S, Taylor D, Thomson DW, Cheung KM, Boxall K, Mas-Droux C, Barillari C, Burns S, Grummitt CG, Collins I, van Montfort RL, Aherne GW, Bayliss R, Hoelder S, J Med Chem. 2010 Oct 11. PMID:20936789
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (2xk7.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 2XK7
  • CSU: Contacts of Structural Units for 2XK7
  • Structure Factors (1187 Kb)
  • Retrieve 2XK7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XK7 from S2C, [Save to disk]
  • Re-refined 2xk7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XK7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XK7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XK7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xk7] [2xk7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XK7: [S_TKc ] by SMART
  • Other resources with information on 2XK7
  • Community annotation for 2XK7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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