2XML date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, EDO, NI, OGA, ZN BindingDB enzyme
Primary referenceStructural and evolutionary basis for the dual substrate selectivity of human KDM4 histone demethylase family., Hillringhaus L, Yue WW, Rose NR, Ng SS, Gileadi C, Loenarz C, Bello SH, Bray JE, Schofield CJ, Oppermann U, J Biol Chem. 2011 Dec 2;286(48):41616-25. Epub 2011 Sep 13. PMID:21914792
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (2xml.pdb1.gz) 114 Kb
  • Biological Unit Coordinates (2xml.pdb2.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 2XML
  • CSU: Contacts of Structural Units for 2XML
  • Structure Factors (1584 Kb)
  • Retrieve 2XML in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XML from S2C, [Save to disk]
  • Re-refined 2xml structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XML in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xml] [2xml_A] [2xml_B]
  • SWISS-PROT database:
  • Domains found in 2XML: [JmjC] [JmjN ] by SMART

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