2XN3 Transport date Jul 30, 2010
title Crystal Structure Of Thyroxine-Binding Globulin Complexed Wi Mefenamic Acid
authors X.Qi, Y.Yan, Z.Wei, A.Zhou
compound source
Molecule: Thyroxine-Binding Globulin
Chain: A
Fragment: Residues 33-375
Synonym: T4-Binding Globulin, Serpin A7
Engineered: Yes
Mutation: Yes
Other_details: Residues 346-355 Of Tbg Were Replaced By Gam
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Psumo3

Molecule: Thyroxine-Binding Globulin
Chain: B
Fragment: Residues 377-415
Synonym: T4-Binding Globulin, Serpin A7
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Psumo3
symmetry Space Group: P 21 21 2
R_factor 0.210 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
172.835 41.624 56.188 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.09 Å
ligand ID8 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAllosteric modulation of hormone release from thyroxine and corticosteroid binding-globulins., Qi X, Loiseau F, Chan WL, Yan Y, Wei Z, Milroy LG, Myers RM, Ley SV, Read RJ, Carrell RW, Zhou A, J Biol Chem. 2011 Feb 16. PMID:21325280
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (2xn3.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 2XN3
  • CSU: Contacts of Structural Units for 2XN3
  • Structure Factors (1126 Kb)
  • Retrieve 2XN3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XN3 from S2C, [Save to disk]
  • Re-refined 2xn3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XN3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XN3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XN3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xn3] [2xn3_B] [2xn3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XN3: [SERPIN ] by SMART
  • Other resources with information on 2XN3
  • Community annotation for 2XN3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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