2XND	Hydrolase	date	Aug 02, 2010
title	Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthas
authors	I.N.Watt, M.G.Montgomery, M.J.Runswick, A.G.W.Leslie, J.E.Walker
compound		source
Molecule: Atp Synthase Subunit Alpha, Mitochondrial Chain: A, B, C Fragment: Residues 62-553 Ec: 3.6.3.14		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle
Molecule: Atp Synthase Subunit Beta, Mitochondrial Chain: D, E, F Fragment: Residues 59-525 Ec: 3.6.3.14		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle
Molecule: Atp Synthase Subunit Gamma, Mitochondrial Chain: G Fragment: Residues 26-297 Synonym: F-Atpase Gamma Subunit Ec: 3.6.3.14		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle
Molecule: Atp Synthase Subunit Delta, Mitochondrial Chain: H Fragment: Residues 37-167 Synonym: F-Atpase Delta Subunit Ec: 3.6.3.14		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle
Molecule: Atp Synthase Subunit Epsilon, Mitochondrial Chain: I Fragment: Residues 2-48 Synonym: Atpase Subunit Epsilon Ec: 3.6.3.14		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle
Molecule: Atp Synthase Lipid-Binding Protein, Mitochondrial Chain: J, K, L, M, N, O, P, Q Fragment: Residues 63-134 Synonym: Atp Synthase Proteolipid P1, Atpase Protein 9, Atp Subunit C; Ec: 3.6.3.14		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle
symmetry	Space Group: P 21 21 21	R_factor 0.261 R_Free 0.304
crystal cell	length a length b length c angle alpha angle beta angle gamma 155.740 157.100 247.270 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.50 Å
ligand	ANP, GOL, MG, SO4	enzyme	Hydrolase E.C.3.6.3.14 BRENDA
Gene Ontology	Chain Function Process Component C, A, B F, E, D G H I N, K, Q, M, L, J, O, P
Primary reference	Bioenergetic cost of making an adenosine triphosphate molecule in animal mitochondria., Watt IN, Montgomery MG, Runswick MJ, Leslie AG, Walker JE, Proc Natl Acad Sci U S A. 2010 Sep 28;107(39):16823-7. Epub 2010 Sep 16. PMID:20847295

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (556 Kb) [Save to disk] Biological Unit Coordinates (2xnd.pdb1.gz) 546 Kb LPC: Ligand-Protein Contacts for 2XND CSU: Contacts of Structural Units for 2XND Structure Factors (656 Kb) Retrieve 2XND in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2XND from S2C, [Save to disk] Re-refined 2xnd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2XND in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2XND

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2XND, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2xnd_A] [2xnd_G] [2xnd_I] [2xnd_J] [2xnd_K] [2xnd_B] [2xnd_M] [2xnd_L] [2xnd_N] [2xnd_F] [2xnd_H] [2xnd_Q] [2xnd] [2xnd_C] [2xnd_O] [2xnd_P] [2xnd_D] [2xnd_E] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2XND: [AAA ] by SMART

Other resources with information on 2XND

Community annotation for 2XND at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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