2XNY Cell Adhesion date Aug 06, 2010
title A Fragment Of Streptococcal M1 Protein In Complex With Human Fibrinogen
authors P.Macheboeuf, C.Y Fu, A.S.Zinkernagel, J.E.Johnson, V.Nizet, P.Gh
compound source
Molecule: Fibrinogen Alpha Chain
Chain: A, D
Fragment: Fragment D, Residues 130-216
Synonym: Fibrinopeptide A, Human Fibrinogen
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Fibrinogen Beta Chain
Chain: B, E
Fragment: Fragment D, Residues 164-491
Synonym: Human Fibrinogen, Fibrinopeptide B

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Fibrinogen Gamma Chain
Chain: C, F
Fragment: Fragment D, Residues 114-432
Synonym: Human Fibrinogen

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: M Protein
Chain: M, N
Fragment: N-Terminal Fragment, Residues 42-134
Engineered: Yes

Organism_scientific: Streptococcus Pyogenes
Organism_taxid: 1314
Strain: 5448
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 32 2 1
R_factor 0.424 R_Free 0.408
crystal
cell
length a length b length c angle alpha angle beta angle gamma
165.687 165.687 289.652 90.00 90.00 120.00
method X-Ray Diffractionresolution 7.50 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStreptococcal M1 protein constructs a pathological host fibrinogen network., Macheboeuf P, Buffalo C, Fu CY, Zinkernagel AS, Cole JN, Johnson JE, Nizet V, Ghosh P, Nature. 2011 Apr 7;472(7341):64-8. PMID:21475196
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]
  • Biological Unit Coordinates (2xny.pdb1.gz) 106 Kb
  • Biological Unit Coordinates (2xny.pdb2.gz) 106 Kb
  • Biological Unit Coordinates (2xny.pdb3.gz) 15 Kb
  • CSU: Contacts of Structural Units for 2XNY
  • Structure Factors (79 Kb)
  • Retrieve 2XNY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XNY from S2C, [Save to disk]
  • Re-refined 2xny structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XNY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XNY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XNY, from MSDmotif at EBI
  • Fold representative 2xny from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xny_C] [2xny_M] [2xny_F] [2xny_E] [2xny_A] [2xny_D] [2xny] [2xny_N] [2xny_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XNY: [FBG ] by SMART
  • Other resources with information on 2XNY
  • Community annotation for 2XNY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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