2XO7	Transferase Dna	date	Aug 10, 2010
title	Crystal Structure Of A Da:O-Allylhydroxylamine-Dc Basepair I With Fragment Dna Polymerase I From Bacillus Stearothermoph
authors	M.Muenzel, L.Lercher, M.Mueller, T.Carell
compound		source
Molecule: Dna Polymerase I Chain: A Fragment: Residues 297-876 Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422 Strain: Dsm 22 Atcc: 12980 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Other_details: German Collection Of Microorganisms (Dsm)
Molecule: 5'-D(Gpapcpcpaptp47ccpcpt)-3' Chain: B Synonym: Polydesoxyribonucleotide Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: 5'-D(Apgpgpapaptpgpgptpcpa)-3' Chain: C Synonym: Polydesoxyribonucleotide Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.215 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.478 93.636 105.091 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.85 Å
ligand	47C, SO4	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A DNA-directed DNA polymerase ... 3'-5' exonuclease activity
Primary reference	Chemical discrimination between dC and 5MedC via their hydroxylamine adducts., Munzel M, Lercher L, Muller M, Carell T, Nucleic Acids Res. 2010 Sep 2. PMID:20813757

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (2xo7.pdb1.gz) 100 Kb LPC: Ligand-Protein Contacts for 2XO7 CSU: Contacts of Structural Units for 2XO7 Structure Factors (163 Kb) Retrieve 2XO7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2XO7 from S2C, [Save to disk] Re-refined 2xo7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2XO7 in 3D

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Visual 3D analysis of 2XO7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2XO7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2xo7] [2xo7_B] [2xo7_C] [2xo7_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 2XO7: [35EXOc] [POLAc ] by SMART

Other resources with information on 2XO7

Community annotation for 2XO7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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