2XOY Ligase date Aug 24, 2010
title C-Terminal Cysteine-Rich Domain Of Human Chfr Bound To P(1), P(2)-Diadenosine-5'-Pyrophosphate
authors J.Oberoi, R.Bayliss
compound source
Molecule: E3 Ubiquitin-Protein Ligase Chfr
Chain: A, B
Fragment: Cysteine-Rich Region, Residues 407-664
Synonym: Chfr, Checkpoint With Forkhead And Ring Finger Dom Protein, Ring Finger Protein 196;
Ec: 6.3.2.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Codonplus Ril Bl21-De3
symmetry Space Group: C 1 2 1
R_factor 0.1947 R_Free 0.2460
crystal
cell
length a length b length c angle alpha angle beta angle gamma
163.050 52.120 83.610 90.00 105.34 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ADE, AMP, ZN enzyme Ligase E.C.6.3.2 BRENDA
Primary referenceStructural basis of poly(ADP-ribose) recognition by the multizinc binding domain of checkpoint with forkhead-associated and RING Domains (CHFR)., Oberoi J, Richards MW, Crumpler S, Brown N, Blagg J, Bayliss R, J Biol Chem. 2010 Dec 10;285(50):39348-58. Epub 2010 Sep 29. PMID:20880844
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2xoy.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (2xoy.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2XOY
  • CSU: Contacts of Structural Units for 2XOY
  • Structure Factors (1133 Kb)
  • Retrieve 2XOY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XOY from S2C, [Save to disk]
  • Re-refined 2xoy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XOY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XOY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XOY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xoy] [2xoy_B] [2xoy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2XOY
  • Community annotation for 2XOY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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