2XP2 Transferase date Aug 24, 2010
title Structure Of The Human Anaplastic Lymphoma Kinase In Complex Crizotinib (Pf-02341066)
authors M.Mctigue, Y.Deng, W.Liu, A.Brooun, S.Timofeevski, T.Marrone, J.J.
compound source
Molecule: Tyrosine-Protein Kinase Receptor
Chain: A
Fragment: Tyrosine Kinase Domain, Residues 105-423
Synonym: Anaplastic Lymphoma Kinase
Ec: 2.7.10.1
Engineered: Yes
Other_details: Nonphosphorylated
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.633 57.086 104.709 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand VGH BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure Based Drug Design of Crizotinib (PF-02341066), a Potent and Selective Dual Inhibitor of Mesenchymal-Epithelial Transition Factor (c-MET) Kinase and Anaplastic Lymphoma Kinase (ALK)., Cui JJ, Tran-Dube M, Shen H, Nambu M, Kung PP, Pairish M, Jia L, Meng J, Funk L, Botrous I, McTigue M, Grodsky N, Ryan K, Padrique E, Alton G, Timofeevski S, Yamazaki S, Li Q, Zou H, Christensen J, Mroczkowski B, Bender S, Kania RS, Edwards MP, J Med Chem. 2011 Sep 22;54(18):6342-6363. Epub 2011 Aug 18. PMID:21812414
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2xp2.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2XP2
  • CSU: Contacts of Structural Units for 2XP2
  • Structure Factors (192 Kb)
  • Retrieve 2XP2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XP2 from S2C, [Save to disk]
  • Re-refined 2xp2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XP2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XP2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XP2, from MSDmotif at EBI
  • Fold representative 2xp2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xp2] [2xp2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XP2: [TyrKc ] by SMART
  • Other resources with information on 2XP2
  • Community annotation for 2XP2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science