2XQH Cell Adhesion date Sep 02, 2010
title Crystal Structure Of An Immunoglobulin-Binding Fragment Of T Trimeric Autotransporter Adhesin Eibd
authors J.C.Leo, A.Lyskowski, M.Hartmann, H.Schwarz, D.Linke, A.N.Lupas, A
compound source
Molecule: Immunoglobulin-Binding Protein Eibd
Chain: A
Fragment: Immunoglobulin-Binding Domain, Residues 160-418
Synonym: Trimeric Autotransporter Adhesin Eibd
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Ecor-9
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: H 3
R_factor 0.159 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.950 48.950 409.600 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.99 Å
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Structure of E. coli IgG-Binding Protein D Suggests a General Model for Bending and Binding in Trimeric Autotransporter Adhesins., Leo JC, Lyskowski A, Hattula K, Hartmann MD, Schwarz H, Butcher SJ, Linke D, Lupas AN, Goldman A, Structure. 2011 Jul 13;19(7):1021-30. PMID:21742268
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (2xqh.pdb1.gz) 237 Kb
  • LPC: Ligand-Protein Contacts for 2XQH
  • CSU: Contacts of Structural Units for 2XQH
  • Structure Factors (198 Kb)
  • Retrieve 2XQH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XQH from S2C, [Save to disk]
  • Re-refined 2xqh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XQH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XQH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XQH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xqh] [2xqh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XQH
  • Community annotation for 2XQH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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